STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_11025Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1647 aa)    
Predicted Functional Partners:
xlnA_11
alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.780
IQ63_36855
Sugar-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.624
katE
Hydroperoxidase; Catalase HPII; monofunctional catalase that decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.622
IQ63_09765
Hydrolytic protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
xlnA_4
Ricin B lectin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
guaB_2
Inosine-5-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.575
xlnA_10
alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
xlnA_5
Ricin B lectin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.567
IQ63_34870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.558
IQ63_19260
Cell wall assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.555
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.