Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
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[Homology]
Score
proP_2Shikimate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (454 aa)    
Predicted Functional Partners:
hpd_1
4-hydroxyphenylpyruvate dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
yjjN_1
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
IQ63_00700
Lactate 2-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.590
IQ63_11220
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.589
IQ63_11225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.589
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.553
IQ63_40245
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
IQ63_42030
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
IQ63_42010
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.521
IQ63_42020
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.461
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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