STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_12475Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (61 aa)    
Predicted Functional Partners:
IQ63_12470
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.798
IQ63_12465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.786
IQ63_00865
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.728
dacF
D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S11 family.
     
 0.722
sglT_1
Na+:solute symporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
     
 0.715
IQ63_20285
Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.701
IQ63_00860
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.697
IQ63_00245
Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.688
IQ63_16630
Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.685
IQ63_11540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.