STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_13575Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)    
Predicted Functional Partners:
tycC_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.879
IQ63_45195
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.806
IQ63_10840
phenylacetate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.756
paaK
phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
 
 0.756
IQ63_13585
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.731
aam
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.724
atzF
Catalyzes the hydrolysis of allophanate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.724
eryA_12
Acyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.669
pobB_1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.652
IQ63_10875
stearoyl-CoA 9-desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.652
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.