Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ycjS_3Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)    
Predicted Functional Partners:
IQ63_13620
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.949
IQ63_13625
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.922
IQ63_13615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.718
IQ63_30780
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.704
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.614
afr_6
Myo-inositol 2-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.585
IQ63_30760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
afr_7
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.537
iolI
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.518
IQ63_07975
Adenosylhomocysteinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.513
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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