STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjS_3Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)    
Predicted Functional Partners:
IQ63_13620
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.947
IQ63_13625
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.924
wbpA
UDP-N-acetyl-D-glucosamine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 
 0.916
IQ63_13615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.720
IQ63_30780
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.713
iolI
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
  0.621
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the TPP enzyme family.
 
  
 0.613
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
 0.605
iolB
IolB protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.605
IQ63_43995
Xylose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.589
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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