STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yddE_2Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)    
Predicted Functional Partners:
IQ63_38825
Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.659
IQ63_13810
Autoregulator biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.635
yqjI
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
IQ63_23665
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.575
phzD
Isochorismatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.539
IQ63_13775
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.537
estB_4-2
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.495
aroH_3
Phospho-2-dehydro-3-deoxyheptonate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II DAHP synthase family.
  
  
 0.449
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.