STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_14440Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)    
Predicted Functional Partners:
copZ
Copper-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.799
IQ63_14435
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.643
IQ63_24515
Glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
IQ63_11715
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.507
IQ63_44640
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
copA_2
Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.456
IQ63_14310
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
IQ63_05080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
IQ63_32465
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.436
IQ63_24520
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.423
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.