STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csgD_1LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)    
Predicted Functional Partners:
luxQ_2
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.986
IQ63_14625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.929
IQ63_14640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.926
luxQ_1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.909
mpa
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.908
IQ63_14630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.886
IQ63_14605
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.767
IQ63_14600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.754
IQ63_14565
Type IV secretion protein Rhs; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.748
IQ63_14550
Baseplate J family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.745
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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