Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_14945Cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
IQ63_26615
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.591
IQ63_28585
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.580
IQ63_27585
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.566
IQ63_22850
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.565
IQ63_04555
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.561
IQ63_21740
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.554
IQ63_26655
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.546
ureC
Urease subunit alpha; Ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.528
IQ63_30720
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.476
IQ63_17990
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.464
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.