STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_14945Cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (118 aa)    
Predicted Functional Partners:
IQ63_26615
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.594
IQ63_28585
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.583
ureC
Urease subunit alpha; Ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.581
IQ63_27585
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.571
IQ63_22850
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.570
IQ63_04555
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.563
IQ63_21740
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.559
IQ63_26655
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.551
IQ63_30720
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.481
IQ63_17990
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.470
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.