STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paaDPhenylacetic acid degradation protein PaaD; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)    
Predicted Functional Partners:
paaB
phenylacetate-CoA oxygenase; With PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
paaC
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
paaA
phenylacetate-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.998
paaE
Phenylacetic acid degradation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
paaK
phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
  
 0.946
IQ63_10840
phenylacetate--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.940
paaG_3
enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.924
pht2
Iron-sulfur protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.847
pobB_2
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.843
pobB_1
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.840
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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