STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_16645Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)    
Predicted Functional Partners:
IQ63_16635
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.876
IQ63_16640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.876
IQ63_16650
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.804
IQ63_16655
Fatty acid-binding protein; May play a role in the intracellular transport of hydrophobic ligands.
       0.785
fur
Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.
       0.773
IQ63_16665
Folate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GcvT family.
       0.725
IQ63_16610
Sulfur reduction protein DsrE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.708
nhaA
pH-dependent sodium/proton antiporter; Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons; Belongs to the NhaA Na(+)/H(+) (TC 2.A.33) antiporter family.
   
    0.609
otsB
Trehalose phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.584
IQ63_16625
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.517
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.