STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_17655Nucleotidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (271 aa)    
Predicted Functional Partners:
crp_3
Crp/Fnr family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.762
IQ63_05260
Preprotein translocase subunit SecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.692
pdg
Endonuclease; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
       0.671
IQ63_07260
DNA polymerase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.600
IQ63_17670
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.598
IQ63_31160
Bifunctional protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.580
cenA_2
Cellulose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.561
IQ63_04430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
IQ63_22970
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.520
IQ63_35730
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.511
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.