STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_18340VWA containing CoxE family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)    
Predicted Functional Partners:
IQ63_18330
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.970
IQ63_18335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.970
IQ63_18350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.965
IQ63_18345
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.954
bchI
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.947
IQ63_28030
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.803
cobN
Cobalamin biosynthesis protein CobN; With CobST catalyzes the formation of cobyrinic acid a,c-diamide from hydrogenobyrinic acid a,c-diamide in an ATP-dependent manner; involved in porphyrin and chlorophyll metabolism; vitamin B12 metabolism; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.693
IQ63_28035
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.654
IQ63_37595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.615
IQ63_00330
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.578
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.