STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbD_2Sugar hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)    
Predicted Functional Partners:
ampH_2
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.929
ybbD_1
Sugar hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.902
chtA
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 18 family.
   
 
 0.892
IQ63_25080
beta-N-acetylglucosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.889
strH
Glycosyl hydrolase family 20; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.763
chiA
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.735
murQ
N-acetylmuramic acid 6-phosphate etherase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.642
tsaE
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.614
nagA
N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.584
amy
Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
   
 
 0.564
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.