STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_18540Malonyl CoA-ACP transacylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)    
Predicted Functional Partners:
mngB_3
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.886
eryA_12
Acyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.818
fabD_2
ACP S-malonyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.799
mngB_1
Alpha-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.762
mngB_2
Alpha-mannosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.762
ybbH
Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.713
IQ63_18555
Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.632
araQ_22
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.555
lacF_24
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.555
IQ63_18535
Sugar ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.555
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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