STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_18655Metalloenzyme domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)    
Predicted Functional Partners:
pdp
Pyrimidine-nucleoside phosphorylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.972
IQ63_18645
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.970
IQ63_18650
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.970
hemN_1
Coproporphyrinogen III oxidase; Catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.970
IQ63_18665
Radical SAM protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.970
IQ63_18640
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.925
IQ63_18635
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.865
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate.
  
 
 0.833
mtnP
Purine nucleoside phosphorylase; Purine nucleoside phosphorylase involved in purine salvage.
 
  
 0.750
IQ63_00155
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.724
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.