STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_19885XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (84 aa)    
Predicted Functional Partners:
map-1_1
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
 
    0.832
IQ63_19880
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.755
argD_1
Aminotransferase class III; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.676
IQ63_19865
PucR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.673
IQ63_19860
Acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.646
fgd1_1
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.635
IQ63_19855
Phenylhydantoinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.635
IQ63_08435
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
IQ63_03575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.401
IQ63_15250
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.401
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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