STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_20935Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)    
Predicted Functional Partners:
pelE
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.759
IQ63_43115
Rhamnogalacturonase B precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.759
IQ63_20970
Rhamnogalacturonase B precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
pelA_3
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.722
pelA_1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.712
amy
Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
  
 
 0.674
IQ63_09265
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.633
IQ63_05255
Beta-1,6-galactanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.627
sufS_2
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.620
csd_2
Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
    
   0.620
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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