STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_21330A-factor biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (313 aa)    
Predicted Functional Partners:
sabR
Gamma-butyrolactone-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.840
arpA_3
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.829
arpA_1
Branched-chain amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.724
IQ63_26635
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
IQ63_35955
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.575
IQ63_02240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.569
IQ63_05010
Universal stress protein UspA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.551
IQ63_35760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.544
IQ63_14160
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.540
IQ63_10780
Regulatory protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.509
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.