Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_21740Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (406 aa)    
Predicted Functional Partners:
IQ63_17535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.654
IQ63_12980
Resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.646
IQ63_26660
Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.634
IQ63_29760
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.602
IQ63_04550
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.590
IQ63_28590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.573
IQ63_11275
Cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.559
IQ63_14945
Cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.554
IQ63_14935
Cytosine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.552
rpsO
30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
    
   0.532
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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