STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kupDNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)    
Predicted Functional Partners:
trkA_1
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.900
trkA_2
Potassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.881
amy
Sulfonate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 13 family.
   
 0.799
treS
Trehalose synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.798
glgE1
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
    
 0.798
malL_1
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.798
aml
Alpha-amlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.798
malL_2
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.798
IQ63_22145
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     0.787
IQ63_22120
RNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.772
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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