Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
IQ63_22285Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)    
Predicted Functional Partners:
csiR_1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.736
IQ63_03820
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.720
ponA1_3
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
ponA1_1
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.661
pbpF
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.654
ponA1_4
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.618
ptrA_1
Peptidase M16; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.610
ponA1_2
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.609
gyrA_1
DNA topoisomerase IV subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.552
IQ63_22290
Protease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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