STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
khtTPotassium transporter TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)    
Predicted Functional Partners:
yhaU_3
Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.965
yhaU_2
Potassium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.854
yhaU_1
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.838
nreC_7
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.753
nreB_4
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.753
IQ63_15740
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.562
opuAB_2
Glycine/betaine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.512
IQ63_03450
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0109 family.
      
 0.483
IQ63_13165
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.483
IQ63_42695
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.483
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.