STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dagK_2DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (322 aa)    
Predicted Functional Partners:
groEL
Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
    
  0.874
groEL-2
Molecular chaperone GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
    
  0.874
IQ63_23150
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
whiB1_4
WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
     
 0.772
IQ63_37595
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.689
tycC_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.637
IQ63_34585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.637
lgrB
Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.629
IQ63_27855
Chorismate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.625
IQ63_00330
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.593
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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