STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigE_1RNA polymerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)    
Predicted Functional Partners:
IQ63_24590
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.839
IQ63_31915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.796
IQ63_24580
MarR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.787
tdcB_1
Threonine dehydratase; Catalyzes the formation of 2-oxobutanoate from L-threonine; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
IQ63_25670
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
drrB_1
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.666
IQ63_25680
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
IQ63_05775
RNA polymerase subunit sigma; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.627
rsrA
Anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.613
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.596
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.