Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_24670DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)    
Predicted Functional Partners:
IQ63_24665
Toxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.877
IQ63_24675
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.775
IQ63_14055
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.774
IQ63_37395
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.772
IQ63_30195
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.770
IQ63_08375
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
IQ63_30935
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.767
IQ63_07310
AbaA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
IQ63_31855
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.757
smc_2
RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.746
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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