STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kptARNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase. (183 aa)    
Predicted Functional Partners:
sadH_2
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.760
IQ63_25660
Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.760
ymdB_1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.751
yxlF_3
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
IQ63_25670
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
drrA_4
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.686
IQ63_25680
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.685
IQ63_25685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.628
yidA_2
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.578
fgd1_4
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.576
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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