Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
drrA_4ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (303 aa)    
Predicted Functional Partners:
IQ63_25680
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.980
IQ63_25670
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.979
yxlF_3
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.907
IQ63_25685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.774
kptA
RNA 2'-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
       0.664
IQ63_17365
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.654
cydD
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.643
IQ63_03250
2-phospho-L-lactate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.606
yidA_2
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.590
sadH_2
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.558
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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