STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_263102OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (782 aa)    
Predicted Functional Partners:
tuf_1
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.657
tuf_2
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.657
IQ63_43115
Rhamnogalacturonase B precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.612
IQ63_20970
Rhamnogalacturonase B precursor; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.605
IQ63_26305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.602
IQ63_31525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.554
celS_1
Endo-1,4-beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
  
     0.502
IQ63_35735
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.477
IQ63_26300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.470
IQ63_41410
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.