STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_27170Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (268 aa)    
Predicted Functional Partners:
rplA
50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
       0.783
IQ63_25735
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.728
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
       0.725
IQ63_38070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.709
IQ63_27495
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
       0.693
IQ63_13510
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.690
IQ63_31145
Beta-xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.684
IQ63_27175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.675
nusG
Transcription termination/antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
       0.672
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.