Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
xlnA_91,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)    
Predicted Functional Partners:
cbhA_2
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.908
IQ63_28605
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.885
IQ63_11280
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.825
IQ63_44110
1,4-beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.819
IQ63_03805
1,4-beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.817
IQ63_28580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.812
xlnB
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.780
cbhA_1
Cellulose 1,4-beta-cellobiosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase family 6.
 
 
 
 0.763
pelA_1
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.759
xynB_1
Xylosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.755
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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