STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_28730Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)    
Predicted Functional Partners:
IQ63_05270
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.853
cypB
Cyclophilin; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 
 0.789
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
 0.789
ppiB
Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.789
resA
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.757
IQ63_39995
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.757
IQ63_02670
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.744
IQ63_43550
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.702
IQ63_28725
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.701
IQ63_01315
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.679
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.