STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IQ63_34910Phosphatidylinositol kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)    
Predicted Functional Partners:
IQ63_28020
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.999
IQ63_34905
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.971
pspA_4
Phosphoglycerate mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.947
IQ63_20130
Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.940
IQ63_28360
Helicase SNF2; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.940
IQ63_07345
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.916
udk_2
Uridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.916
IQ63_36190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.916
acuC
Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.892
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
    
   0.887
Your Current Organism:
Streptomyces acidiscabies
NCBI taxonomy Id: 42234
Other names: ATCC 49003, DSM 41668, ICMP 12536, JCM 7913, KCTC 9736, LMG 19856, LMG:19856, NRRL B-16524, S. acidiscabies, Streptomyces acidiscabiei, strain RL-110
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