Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
IQ63_35045 | IQ63_44210 | IQ63_35045 | IQ63_44210 | Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.515 |
IQ63_35045 | pimA | IQ63_35045 | IQ63_35795 | Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology. | GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.657 |
IQ63_35045 | whiD_1 | IQ63_35045 | IQ63_24095 | Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.758 |
IQ63_42200 | IQ63_44210 | IQ63_42200 | IQ63_44210 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.590 |
IQ63_44210 | IQ63_35045 | IQ63_44210 | IQ63_35045 | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.515 |
IQ63_44210 | IQ63_42200 | IQ63_44210 | IQ63_42200 | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.590 |
IQ63_44210 | blaI_1 | IQ63_44210 | IQ63_44215 | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.531 |
IQ63_44210 | pimA | IQ63_44210 | IQ63_35795 | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.443 |
IQ63_44210 | whiD_1 | IQ63_44210 | IQ63_24095 | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.460 |
blaI_1 | IQ63_44210 | IQ63_44215 | IQ63_44210 | CopY family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.531 |
pimA | IQ63_35045 | IQ63_35795 | IQ63_35045 | GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.657 |
pimA | IQ63_44210 | IQ63_35795 | IQ63_44210 | GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.443 |
pimA | whiD_1 | IQ63_35795 | IQ63_24095 | GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | 0.659 |
whiD_1 | IQ63_35045 | IQ63_24095 | IQ63_35045 | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | Recombinase RecB; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.758 |
whiD_1 | IQ63_44210 | IQ63_24095 | IQ63_44210 | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.460 |
whiD_1 | pimA | IQ63_24095 | IQ63_35795 | Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA. | GDP-mannose-dependent alpha-(1-2)-phosphatidylinositol mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.659 |