Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
A0A317SL08DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1759 aa)    
Predicted Functional Partners:
A0A317SDH5
Uncharacterized protein.
    
 0.999
A0A317SGC1
RNA polymerase Rpb6.
    
 0.999
A0A317SLF6
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
 0.999
A0A317SVX7
RNA polymerase II subunit 3.
    
 0.999
A0A317SY38
S1 motif domain-containing protein.
    
 0.999
A0A317SF03
Uncharacterized protein.
    
 0.998
A0A317SMD8
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.998
A0A317SR40
RPOL4c domain-containing protein.
    
 0.998
A0A317SY63
Nucleic acid-binding protein.
    
 0.998
A0A317SGN4
RPB5 subunit of DNA-directed RNA polymerase.
    
 0.996
Your Current Organism:
Tuber magnatum
NCBI taxonomy Id: 42249
Other names: T. magnatum, gray truffle, white Piedmont truffle, white truffle
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