STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
A0A317SQL3Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (613 aa)    
Predicted Functional Partners:
A0A317STQ5
Replication protein A, subunit RPA32.
   
 0.999
A0A317SXX7
3'-5' exonuclease domain-containing protein.
   
 0.998
A0A317SJW5
ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.
   
 0.992
A0A317SWT3
ATP-dependent DNA helicase.
   
 0.992
A0A317SPK0
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.990
A0A317SH37
DNA topoisomerase; Introduces a single-strand break via transesterification at a target site in duplex DNA. Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. Belongs to the type IA topoisomerase family.
    
 0.989
A0A317SNL5
Uncharacterized protein.
    
 0.987
A0A317SZF8
DNA helicase; Belongs to the MCM family.
   
 0.987
A0A317T255
Replication factor A protein 3.
    
 0.987
A0A317SMX3
DNA polymerase.
   
 0.985
Your Current Organism:
Tuber magnatum
NCBI taxonomy Id: 42249
Other names: T. magnatum, gray truffle, white Piedmont truffle, white truffle
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