A0A317SQL4 protein (Tuber magnatum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A317SQL4

tRNA guanosine-2'-O-methyltransferase. (444 aa)

Predicted Functional Partners:

A0A317SFT0

0.994

A0A317SGZ2

0.984

TRM8

0.915

A0A317T1Y2

0.907

A0A317SEJ1

0.902

A0A317SR14

0.894

A0A317SV99

0.892

A0A317SC71

0.862

A0A317SVU6

0.852

A0A317SQY5

0.838

Your Current Organism:

Tuber magnatum

NCBI taxonomy Id: 42249
Other names: T. magnatum, gray truffle, white Piedmont truffle, white truffle

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A317SC71	A0A317SEJ1	A0A317SC71	A0A317SEJ1	Methyltransferase.	Gcd10p-domain-containing protein.	0.436
A0A317SC71	A0A317SFT0	A0A317SC71	A0A317SFT0	Methyltransferase.	Uncharacterized protein.	0.995
A0A317SC71	A0A317SGZ2	A0A317SC71	A0A317SGZ2	Methyltransferase.	MTS domain-containing protein.	0.758
A0A317SC71	A0A317SQL4	A0A317SC71	A0A317SQL4	Methyltransferase.	tRNA guanosine-2'-O-methyltransferase.	0.862
A0A317SC71	A0A317SR14	A0A317SC71	A0A317SR14	Methyltransferase.	GCD14-domain-containing protein.	0.788
A0A317SC71	A0A317SV99	A0A317SC71	A0A317SV99	Methyltransferase.	Uncharacterized protein.	0.768
A0A317SC71	A0A317T1Y2	A0A317SC71	A0A317T1Y2	Methyltransferase.	Dus-domain-containing protein.	0.514
A0A317SC71	TRM8	A0A317SC71	A0A317STU5	Methyltransferase.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.779
A0A317SEJ1	A0A317SC71	A0A317SEJ1	A0A317SC71	Gcd10p-domain-containing protein.	Methyltransferase.	0.436
A0A317SEJ1	A0A317SFT0	A0A317SEJ1	A0A317SFT0	Gcd10p-domain-containing protein.	Uncharacterized protein.	0.705
A0A317SEJ1	A0A317SQL4	A0A317SEJ1	A0A317SQL4	Gcd10p-domain-containing protein.	tRNA guanosine-2'-O-methyltransferase.	0.902
A0A317SEJ1	A0A317SQY5	A0A317SEJ1	A0A317SQY5	Gcd10p-domain-containing protein.	S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.747
A0A317SEJ1	A0A317SR14	A0A317SEJ1	A0A317SR14	Gcd10p-domain-containing protein.	GCD14-domain-containing protein.	0.998
A0A317SEJ1	A0A317SV99	A0A317SEJ1	A0A317SV99	Gcd10p-domain-containing protein.	Uncharacterized protein.	0.912
A0A317SEJ1	A0A317SVU6	A0A317SEJ1	A0A317SVU6	Gcd10p-domain-containing protein.	WD40 repeat-like protein.	0.731
A0A317SEJ1	A0A317T1Y2	A0A317SEJ1	A0A317T1Y2	Gcd10p-domain-containing protein.	Dus-domain-containing protein.	0.483
A0A317SEJ1	TRM8	A0A317SEJ1	A0A317STU5	Gcd10p-domain-containing protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.968
A0A317SFT0	A0A317SC71	A0A317SFT0	A0A317SC71	Uncharacterized protein.	Methyltransferase.	0.995
A0A317SFT0	A0A317SEJ1	A0A317SFT0	A0A317SEJ1	Uncharacterized protein.	Gcd10p-domain-containing protein.	0.705
A0A317SFT0	A0A317SGZ2	A0A317SFT0	A0A317SGZ2	Uncharacterized protein.	MTS domain-containing protein.	0.998