Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A317SW73PH domain-like protein. (260 aa)    
Predicted Functional Partners:
A0A317T2Z7
Putative ATP dependent RNA helicase; Belongs to the DEAD box helicase family.
    
 0.994
A0A317SYF3
YjeF N-terminal domain-like protein.
    
 0.984
A0A317SWI3
PAT1 domain-containing protein.
    
 0.982
A0A317SLY1
Uncharacterized protein.
    
 0.971
A0A317T1Y8
DCP2-domain-containing protein.
    
 0.971
A0A317SKL7
YjeF N-terminal domain-like protein.
    
 0.950
A0A317SKM1
Uncharacterized protein.
    
 
 0.931
A0A317SK94
TTL-domain-containing protein.
    
 
 0.921
LSM3
U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
    
 0.906
A0A317T2D0
Uncharacterized protein.
   
 0.887
Your Current Organism:
Tuber magnatum
NCBI taxonomy Id: 42249
Other names: T. magnatum, gray truffle, white Piedmont truffle, white truffle
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