STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2T6Z9V7XAP5, circadian clock regulator-domain-containing protein. (339 aa)    
Predicted Functional Partners:
A0A2T6ZUH8
Smg-4/UPF3 family-domain-containing protein.
   
  0.739
A0A2T7A379
Pre-mRNA splicing Prp18-interacting factor-domain-containing protein.
   
 
  0.724
A0A2T6ZBS1
Uncharacterized protein.
    
  0.720
A0A2T6ZFV6
RRM domain-containing protein.
   
  0.695
A0A2T6ZUB6
WD40-repeat-containing domain protein.
   
 
  0.693
A0A2T6ZLJ6
MI domain-containing protein.
    
  0.689
A0A2T6ZT01
RRM domain-containing protein.
   
  0.689
A0A2T6ZP80
P-loop containing nucleoside triphosphate hydrolase protein.
    
  0.657
A0A2T7A4V3
P-loop containing nucleoside triphosphate hydrolase protein.
    
  0.657
A0A2T7A2V6
P-loop containing nucleoside triphosphate hydrolase protein.
    
  0.652
Your Current Organism:
Tuber borchii
NCBI taxonomy Id: 42251
Other names: T. borchii, whitish truffle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.