A0A2T6ZDM2 protein (Tuber borchii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2T6ZDM2

Ureidoglycolate hydrolase-domain-containing protein. (232 aa)

Predicted Functional Partners:

A0A2T6ZCA7

0.992

A0A2T6ZXN3

0.992

A0A2T6ZMN2

0.985

A0A2T7A1M9

0.985

A0A2T7A2D8

0.985

A0A2T6ZHB9

0.984

A0A2T6ZLI8

0.984

A0A2T6ZNI8

0.984

A0A2T6ZNV4

0.984

A0A2T6ZRI2

0.984

Your Current Organism:

Tuber borchii

NCBI taxonomy Id: 42251
Other names: T. borchii, whitish truffle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2T6ZCA7	A0A2T6ZDM2	P-loop containing nucleoside triphosphate hydrolase protein.	Ureidoglycolate hydrolase-domain-containing protein.	0.992
A0A2T6ZCA7	A0A2T6ZHB9	P-loop containing nucleoside triphosphate hydrolase protein.	Ribosomal protein L24e-domain-containing protein.	0.992
A0A2T6ZCA7	A0A2T6ZLI8	P-loop containing nucleoside triphosphate hydrolase protein.	Ribosomal protein L14-domain-containing protein.	0.995
A0A2T6ZCA7	A0A2T6ZMN2	P-loop containing nucleoside triphosphate hydrolase protein.	Translation protein SH3-like domain-containing protein.	0.992
A0A2T6ZCA7	A0A2T6ZNI8	P-loop containing nucleoside triphosphate hydrolase protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.992
A0A2T6ZCA7	A0A2T6ZNV4	P-loop containing nucleoside triphosphate hydrolase protein.	60S ribosomal protein L5.	0.995
A0A2T6ZCA7	A0A2T6ZRI2	P-loop containing nucleoside triphosphate hydrolase protein.	Ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.	0.992
A0A2T6ZCA7	A0A2T6ZXN3	P-loop containing nucleoside triphosphate hydrolase protein.	Armadillo-type protein.	0.998
A0A2T6ZCA7	A0A2T7A1M9	P-loop containing nucleoside triphosphate hydrolase protein.	Ribosomal protein L23/L15e core domain-containing protein.	0.993
A0A2T6ZCA7	A0A2T7A2D8	P-loop containing nucleoside triphosphate hydrolase protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.992
A0A2T6ZDM2	A0A2T6ZCA7	Ureidoglycolate hydrolase-domain-containing protein.	P-loop containing nucleoside triphosphate hydrolase protein.	0.992
A0A2T6ZDM2	A0A2T6ZHB9	Ureidoglycolate hydrolase-domain-containing protein.	Ribosomal protein L24e-domain-containing protein.	0.984
A0A2T6ZDM2	A0A2T6ZLI8	Ureidoglycolate hydrolase-domain-containing protein.	Ribosomal protein L14-domain-containing protein.	0.984
A0A2T6ZDM2	A0A2T6ZMN2	Ureidoglycolate hydrolase-domain-containing protein.	Translation protein SH3-like domain-containing protein.	0.985
A0A2T6ZDM2	A0A2T6ZNI8	Ureidoglycolate hydrolase-domain-containing protein.	60S ribosomal protein L36; Belongs to the eukaryotic ribosomal protein eL36 family.	0.984
A0A2T6ZDM2	A0A2T6ZNV4	Ureidoglycolate hydrolase-domain-containing protein.	60S ribosomal protein L5.	0.984
A0A2T6ZDM2	A0A2T6ZRI2	Ureidoglycolate hydrolase-domain-containing protein.	Ribosomal protein L38e; Belongs to the eukaryotic ribosomal protein eL38 family.	0.984
A0A2T6ZDM2	A0A2T6ZXN3	Ureidoglycolate hydrolase-domain-containing protein.	Armadillo-type protein.	0.992
A0A2T6ZDM2	A0A2T7A1M9	Ureidoglycolate hydrolase-domain-containing protein.	Ribosomal protein L23/L15e core domain-containing protein.	0.985
A0A2T6ZDM2	A0A2T7A2D8	Ureidoglycolate hydrolase-domain-containing protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.985