STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2T6ZUE0Ribosome 60S biogenesis N-terminal-domain-containing protein. (1808 aa)    
Predicted Functional Partners:
A0A2T6ZUP5
Armadillo-type protein.
   
 
 0.911
A0A2T6ZEQ3
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
   
 
 0.890
A0A2T7A2U1
P-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family.
   
 
 0.882
A0A2T6ZPI7
Urb2/Npa2 family-domain-containing protein.
   
 
 0.869
A0A2T6ZPJ6
Uncharacterized protein.
   
 
 0.869
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.865
A0A2T6ZIG2
Armadillo-type protein.
   
  
 0.860
A0A2T6ZAY1
NOL1/NOP2/sun family-domain-containing protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.846
A0A2T6ZCW5
WD40-repeat-containing domain protein.
   
  
 0.837
A0A2T6ZKU6
CBF/Mak21 family-domain-containing protein.
   
 
 0.837
Your Current Organism:
Tuber borchii
NCBI taxonomy Id: 42251
Other names: T. borchii, whitish truffle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.