A0A2T6ZV36 protein (Tuber borchii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2T6ZV36

Uncharacterized protein. (932 aa)

Predicted Functional Partners:

A0A2T6ZDP3

0.779

A0A2T7A982

0.750

A0A2T6ZRN6

0.737

A0A2T6ZLM1

0.735

A0A2T6ZQB9

0.709

A0A2T6ZUI6

0.708

A0A2T6ZN52

0.640

MED10

0.636

MED17

0.635

MED6

0.631

Your Current Organism:

Tuber borchii

NCBI taxonomy Id: 42251
Other names: T. borchii, whitish truffle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A2T6ZDP3	A0A2T6ZLM1	A0A2T6ZDP3	A0A2T6ZLM1	RPA_C domain-containing protein.	ERCC4 domain-containing protein.	0.949
A0A2T6ZDP3	A0A2T6ZN52	A0A2T6ZDP3	A0A2T6ZN52	RPA_C domain-containing protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.799
A0A2T6ZDP3	A0A2T6ZRN6	A0A2T6ZDP3	A0A2T6ZRN6	RPA_C domain-containing protein.	Uncharacterized protein.	0.881
A0A2T6ZDP3	A0A2T6ZUI6	A0A2T6ZDP3	A0A2T6ZUI6	RPA_C domain-containing protein.	ERCC4 domain-containing protein.	0.879
A0A2T6ZDP3	A0A2T6ZV36	A0A2T6ZDP3	A0A2T6ZV36	RPA_C domain-containing protein.	Uncharacterized protein.	0.779
A0A2T6ZDP3	A0A2T7A982	A0A2T6ZDP3	A0A2T7A982	RPA_C domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.999
A0A2T6ZDP3	MED17	A0A2T6ZDP3	A0A2T6ZXU8	RPA_C domain-containing protein.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.799
A0A2T6ZDP3	MED6	A0A2T6ZDP3	A0A2T6ZUM2	RPA_C domain-containing protein.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.799
A0A2T6ZLM1	A0A2T6ZDP3	A0A2T6ZLM1	A0A2T6ZDP3	ERCC4 domain-containing protein.	RPA_C domain-containing protein.	0.949
A0A2T6ZLM1	A0A2T6ZRN6	A0A2T6ZLM1	A0A2T6ZRN6	ERCC4 domain-containing protein.	Uncharacterized protein.	0.895
A0A2T6ZLM1	A0A2T6ZUI6	A0A2T6ZLM1	A0A2T6ZUI6	ERCC4 domain-containing protein.	ERCC4 domain-containing protein.	0.968
A0A2T6ZLM1	A0A2T6ZV36	A0A2T6ZLM1	A0A2T6ZV36	ERCC4 domain-containing protein.	Uncharacterized protein.	0.735
A0A2T6ZLM1	A0A2T7A982	A0A2T6ZLM1	A0A2T7A982	ERCC4 domain-containing protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.984
A0A2T6ZN52	A0A2T6ZDP3	A0A2T6ZN52	A0A2T6ZDP3	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	RPA_C domain-containing protein.	0.799
A0A2T6ZN52	A0A2T6ZV36	A0A2T6ZN52	A0A2T6ZV36	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.640
A0A2T6ZN52	MED10	A0A2T6ZN52	A0A2T6ZFM9	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator of RNA polymerase II transcription subunit 10; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.998
A0A2T6ZN52	MED17	A0A2T6ZN52	A0A2T6ZXU8	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.998
A0A2T6ZN52	MED6	A0A2T6ZN52	A0A2T6ZUM2	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator of RNA polymerase II transcription subunit 6; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.998
A0A2T6ZQB9	A0A2T6ZV36	A0A2T6ZQB9	A0A2T6ZV36	WD40-repeat-containing domain protein.	Uncharacterized protein.	0.709
A0A2T6ZRN6	A0A2T6ZDP3	A0A2T6ZRN6	A0A2T6ZDP3	Uncharacterized protein.	RPA_C domain-containing protein.	0.881