STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2T7A628Ribonuclease H-like domain-containing protein. (302 aa)    
Predicted Functional Partners:
A0A2T6ZLX4
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.740
A0A2T7A6K3
Uncharacterized protein.
   
 
 0.569
A0A2T6ZU77
Thymidylate synthase/dCMP hydroxymethylase domain-containing protein.
    
 0.568
A0A2T6ZX87
Nucleoside diphosphate kinase.
     
 0.549
A0A2T6ZTD3
NUDIX hydrolase domain-like protein.
    
  0.546
A0A2T6ZZV3
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.546
FEN1
Flap endonuclease 1; Structure-specific nuclease with 5'-flap endonuclease and 5'- 3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic/apyrimidinic (AP) site- terminated flap. Acts as [...]
   
 0.540
A0A2T6ZQS0
XPGI domain-containing protein.
   
 0.528
A0A2T7A5L8
DNA polymerase III, clamp loader complex, gamma/delta/delta subunit.
    
 0.525
A0A2T6ZE78
PIN domain-like protein.
   
 0.522
Your Current Organism:
Tuber borchii
NCBI taxonomy Id: 42251
Other names: T. borchii, whitish truffle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.