A0A2T7A866 protein (Tuber borchii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2T7A866

Mitochondrial ribosomal protein subunit L20-domain-containing protein. (203 aa)

Predicted Functional Partners:

A0A2T6ZR30

0.965

A0A2T6ZIE7

0.941

A0A2T6ZRG4

0.941

A0A2T6ZTQ6

0.937

A0A2T6ZEZ8

0.936

A0A2T6ZDQ9

0.934

A0A2T6ZLN9

0.932

A0A2T6ZPW1

0.931

A0A2T6ZRK5

0.931

A0A2T6ZK95

0.930

Your Current Organism:

Tuber borchii

NCBI taxonomy Id: 42251
Other names: T. borchii, whitish truffle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2T6ZDQ9	A0A2T6ZEZ8	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
A0A2T6ZDQ9	A0A2T6ZIE7	Uncharacterized protein.	Mitochondrial 54S ribosomal protein YmL38/YmL34; Belongs to the universal ribosomal protein uL14 family.	0.987
A0A2T6ZDQ9	A0A2T6ZK95	Uncharacterized protein.	Eukaryotic mitochondrial regulator protein-domain-containing protein.	0.831
A0A2T6ZDQ9	A0A2T6ZLN9	Uncharacterized protein.	Mitochondrial 54S ribosomal protein YmL16; Belongs to the universal ribosomal protein uL6 family.	0.990
A0A2T6ZDQ9	A0A2T6ZPW1	Uncharacterized protein.	Thioredoxin-like protein.	0.984
A0A2T6ZDQ9	A0A2T6ZR30	Uncharacterized protein.	Mitochondrial ribosomal subunit S27-domain-containing protein.	0.944
A0A2T6ZDQ9	A0A2T6ZRG4	Uncharacterized protein.	Ribosomal protein L34-domain-containing protein.	0.953
A0A2T6ZDQ9	A0A2T6ZRK5	Uncharacterized protein.	Ribosomal protein L21-like protein.	0.751
A0A2T6ZDQ9	A0A2T6ZTQ6	Uncharacterized protein.	Mitochondrial ribosomal subunit protein-domain-containing protein.	0.997
A0A2T6ZDQ9	A0A2T7A866	Uncharacterized protein.	Mitochondrial ribosomal protein subunit L20-domain-containing protein.	0.934
A0A2T6ZEZ8	A0A2T6ZDQ9	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Uncharacterized protein.	0.999
A0A2T6ZEZ8	A0A2T6ZIE7	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial 54S ribosomal protein YmL38/YmL34; Belongs to the universal ribosomal protein uL14 family.	0.991
A0A2T6ZEZ8	A0A2T6ZK95	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Eukaryotic mitochondrial regulator protein-domain-containing protein.	0.915
A0A2T6ZEZ8	A0A2T6ZLN9	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial 54S ribosomal protein YmL16; Belongs to the universal ribosomal protein uL6 family.	0.996
A0A2T6ZEZ8	A0A2T6ZPW1	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Thioredoxin-like protein.	0.992
A0A2T6ZEZ8	A0A2T6ZR30	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal subunit S27-domain-containing protein.	0.956
A0A2T6ZEZ8	A0A2T6ZRG4	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L34-domain-containing protein.	0.969
A0A2T6ZEZ8	A0A2T6ZRK5	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Ribosomal protein L21-like protein.	0.927
A0A2T6ZEZ8	A0A2T6ZTQ6	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal subunit protein-domain-containing protein.	0.987
A0A2T6ZEZ8	A0A2T7A866	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	Mitochondrial ribosomal protein subunit L20-domain-containing protein.	0.936