STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALA56586.1Hypothetical protein; Homologs of previously reported genes of unknown function. (167 aa)    
Predicted Functional Partners:
ALA58165.1
Putative Precorrin-2 dehydrogenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.977
cobI
Precorrin-2 C(20)-methyltransferase; Belongs to the precorrin methyltransferase family.
    
 0.920
cbiX
Sirohydrochlorin cobaltochelatase.
 
  
  0.917
ALA56585.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
       0.801
phrA
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
       0.785
cobA/hemD
Uroporphyrinogen-III C-methyltransferase and Uroporphyrinogen-III synthase (Modular protein).
  
  
 0.757
ALA56583.1
Homologs of previously reported genes of unknown function.
       0.752
hemD
Porphyrin biosynthesis protein HemD.
  
  
 0.739
ALA56582.1
Homologs of previously reported genes of unknown function.
       0.736
ALA56581.1
Homologs of previously reported genes of unknown function.
       0.731
Your Current Organism:
Nitrospira moscoviensis
NCBI taxonomy Id: 42253
Other names: DSM 10035, N. moscoviensis, Nitrospira moscoviensis Ehrich et al. 2001, strain NSP M-1
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