STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yrbDPutative ABC transporter, periplasmic binding component, ATP-dependent toluene efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (147 aa)    
Predicted Functional Partners:
yrbE
Toluene transporter subunit: membrane component of ABC superfamily; Function of strongly homologous gene; transporter; Belongs to the MlaE permease family.
 
 0.998
yrbF
Toluene transporter subunit: ATP-binding component of ABC superfamily; Function of strongly homologous gene; transporter.
 
 0.998
ALA57160.1
Putative ABC transporter, auxiliary component, ATP-dependent toluene efflux transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.994
ALA58173.1
Homologs of previously reported genes of unknown function; Belongs to the MlaE permease family.
 
 0.994
ALA58172.1
ABC transporter, ATP-binding protein.
 
 0.987
ALA60314.1
Putative Toluene tolerance-type auxiliary component of ABC-type transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.974
ALA58321.1
Putative Toluene tolerance-type auxiliary component of ABC-type transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.965
ALA58171.1
Putative ABC transporter, periplasmic substrate-binding protein, MCE domain-containing; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
  
  0.919
ALA57156.1
Putative Adenosylhomocysteine nucleosidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.808
shc
Squalene--hopene cyclase.
       0.793
Your Current Organism:
Nitrospira moscoviensis
NCBI taxonomy Id: 42253
Other names: DSM 10035, N. moscoviensis, Nitrospira moscoviensis Ehrich et al. 2001, strain NSP M-1
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