STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALA57324.1TonB-dependent siderophore receptor; Function of strongly homologous gene; receptor. (825 aa)    
Predicted Functional Partners:
fecR
Protein FecR, ferric citrate sensor; Function of strongly homologous gene; regulator.
 
  
 0.836
ALA57322.1
Putative FecR, ferric citrate sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
  
 0.802
ALA57327.1
Putative RNA polymerase sigma factor FecI (sigma-19); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.712
ALA57336.1
Putative FecR, ferric citrate sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
 
  
 0.708
ALA57323.1
Putative RNA polymerase sigma factor FecI (sigma-19); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.680
ALA57344.1
Putative TonB protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.653
ALA57319.1
Homologs of previously reported genes of unknown function.
 
   
 0.636
ALA56986.1
Protein of unknown function (TonB domain); No homology to any previously reported sequences.
 
 
 0.627
ALA57338.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.608
ALA56998.1
Protein of unknown function (TonB domain); No homology to any previously reported sequences.
  
 
 0.553
Your Current Organism:
Nitrospira moscoviensis
NCBI taxonomy Id: 42253
Other names: DSM 10035, N. moscoviensis, Nitrospira moscoviensis Ehrich et al. 2001, strain NSP M-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.