STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALA57339.1Hypothetical protein; Homologs of previously reported genes of unknown function. (179 aa)    
Predicted Functional Partners:
rpoA
RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.822
ALA57338.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.776
ALA58134.1
Transcriptional regulator, AraC family.
  
     0.606
fecI
RNA polymerase sigma factor FecI (sigma-19); Function of strongly homologous gene; putative regulator; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.596
ALA58876.1
Putative Multi-domain non-ribosomal peptide synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.495
ALA57336.1
Putative FecR, ferric citrate sensor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
     
 0.484
ALA57340.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
       0.482
ALA57875.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.410
Your Current Organism:
Nitrospira moscoviensis
NCBI taxonomy Id: 42253
Other names: DSM 10035, N. moscoviensis, Nitrospira moscoviensis Ehrich et al. 2001, strain NSP M-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.