STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALA58085.1Hypothetical protein; Homologs of previously reported genes of unknown function. (115 aa)    
Predicted Functional Partners:
ALA58084.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.954
ALA58446.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.837
ALA57368.1
Putative small protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
 0.810
ALA60740.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
 0.810
ALA57804.1
Hypothetical protein; No homology to any previously reported sequences.
 
 
 0.800
ALA58362.1
Xre family DNA binding protein.
 
 
 0.581
ALA57223.1
Hypothetical protein; No homology to any previously reported sequences.
 
     0.435
Your Current Organism:
Nitrospira moscoviensis
NCBI taxonomy Id: 42253
Other names: DSM 10035, N. moscoviensis, Nitrospira moscoviensis Ehrich et al. 2001, strain NSP M-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.