STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALA58383.1Modification methylase XhoI. (572 aa)    
Predicted Functional Partners:
ALA57887.1
Type I restriction-modification system DNA specificity subunit.
  
 
 0.955
ALA57891.1
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
 
 0.955
ALA58307.1
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.955
paeR7IR
Type-2 restriction enzyme PaeR7I.
 
     0.917
ALA58303.1
Type III restriction protein res subunit.
  
 
 0.772
ALA58306.1
Hypothetical protein; No homology to any previously reported sequences.
  
 
 0.772
ALA59465.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.635
ALA58308.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.544
ALA60990.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.508
ALA60059.1
Hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.487
Your Current Organism:
Nitrospira moscoviensis
NCBI taxonomy Id: 42253
Other names: DSM 10035, N. moscoviensis, Nitrospira moscoviensis Ehrich et al. 2001, strain NSP M-1
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